Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0802557.4d with 1 members (kelch domain containing)

Eukaryota / Metamonada

Completeness score: 0.20

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This HOG has 16 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0802557.10bi.51b	5	21	kelch domain containing
2	HOG:E0777876.3a.9a	3	20	rab9 effector protein with kelch motifs
3	HOG:E0802557.10ao.44u.25a	2	36	kelch domain containing
4	HOG:E0777876.3a	2	198	rab9 effector protein with kelch motifs
5	HOG:E0802557.7d	1	15	kelch domain containing
6	HOG:E0802557.6l	1	1	kelch domain containing
7	HOG:E0802557.6k	1	5	kelch domain containing
8	HOG:E0802557.6i	1	1	kelch domain containing
9	HOG:E0802557.10bx.69a	1	2	kelch domain containing
10	HOG:E0802557.10bi.53b	1	7	kelch domain containing
11	HOG:E0802557.10bi	1	303	kelch domain containing
12	HOG:E0793602.2a.1b	1	1	rab9 effector protein with kelch motifs
13	HOG:E0738086.1a	1	19	Rab9 effector protein with kelch
14	HOG:E0569531.1b	1	2	Kelch domain-containing protein
15	HOG:E0319813.3a	1	1	Rab9 effector protein with kelch motifs
16	HOG:E0289862.1a	1	1	Galactose oxidase/kelch repeat superfamily protein

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